2025-02-08_00000013
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hard
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8K85
Crystal structure of Red Broccoli aptamer with OBI;
X-ray diffraction 2.95Å
RNA #1
56 bases
Raw Sequence ...
GGAGACGGUCGGGUCCAGUCGCAACGAUGUUGGCUGUUGAGUAGUGUGUGGGCUCC
Canonical Sequence ...
GGAGACGGUCGGGUCCAGUCGCAACGAUGUUGGCUGUUGAGUAGUGUGUGGGCUCC
Non polymer #2
A1EBI
InChI=1S/C19H13F2N5O3/c20-12-4-10(5-13(21)18(12)27)6-15-19(28)26(16(25-15)7-24-29)8-11-2-1-3-14-17(11)23-9-22-14/h1-7,9,27,29H,8H2,(H,22,23)/b15-6-,24-7+
InChI=1S/C19H13F2N5O3/c20-12-4-10(5-13(21)18(12)27)6-15-19(28)26(16(25-15)7-24-29)8-11-2-1-3-14-17(11)23-9-22-14/h1-7,9,27,29H,8H2,(H,22,23)/b15-6-,24-7+
SMILES: c1cc(c2c(c1)nc[nH]2)CN3C(=N/C(=Cc4cc(c(c(c4)F)O)F)/C3=O)/C=N/O
c1cc(c2c(c1)nc[nH]2)CN3C(=N/C(=Cc4cc(c(c(c4)F)O)F)/C3=O)/C=N/O
Non polymer #3
K
InChI=1S/K/q+1
InChI=1S/K/q+1
SMILES: [K+]
[K+]
Non polymer #4
MPD
InChI=1S/C6H14O2/c1-5(7)4-6(2,3)8/h5,7-8H,4H2,1-3H3/t5-/m0/s1
InChI=1S/C6H14O2/c1-5(7)4-6(2,3)8/h5,7-8H,4H2,1-3H3/t5-/m0/s1
SMILES: C[C@@H](CC(C)(C)O)O
C[C@@H](CC(C)(C)O)O
Non polymer #5
NA
InChI=1S/Na/q+1
InChI=1S/Na/q+1
SMILES: [Na+]
[Na+]
Biounit #1
homo-dimer
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Biounit #2
homo-octamer
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Biounit #3
homo-tetramer
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