2025-01-18_00000074
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ligand
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8XXS
Crystal structure of PDE4D catalytic domain complexed with L11;
X-ray diffraction 2.10Å
Protein #1
334 residues (96% resolved)
Raw Sequence ...
IPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQ
Canonical Sequence ...
IPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQ
Non polymer #2
A1D5M
InChI=1S/C19H16F2O4/c20-19(21)25-15-6-4-13(8-18(15)23-10-11-1-2-11)16-7-12-3-5-14(22)9-17(12)24-16/h3-9,11,19,22H,1-2,10H2
InChI=1S/C19H16F2O4/c20-19(21)25-15-6-4-13(8-18(15)23-10-11-1-2-11)16-7-12-3-5-14(22)9-17(12)24-16/h3-9,11,19,22H,1-2,10H2
SMILES: c1cc(cc2c1cc(o2)c3ccc(c(c3)OCC4CC4)OC(F)F)O
c1cc(cc2c1cc(o2)c3ccc(c(c3)OCC4CC4)OC(F)F)O
Non polymer #3
MG
InChI=1S/Mg/q+2
InChI=1S/Mg/q+2
SMILES: [Mg+2]
[Mg+2]
Non polymer #4
ZN
InChI=1S/Zn/q+2
InChI=1S/Zn/q+2
SMILES: [Zn+2]
[Zn+2]
Biounit #1
monomer
Download coordinates
Biounit #2
monomer
Download coordinates
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Model
Reference
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