2024-12-28_00000166|hard|9IXM

Cryo-EM structure of Lactobacillus casei DdmDE bound with DNA; Electron microscopy 3.26Å
Protein #1 1192 residues (98% resolved)

MQVSDFSGMIKKLQSQSPEHALMLLNAPTGTGKSYTIIRALCRYAIKHENFRAFFVTDQKKNLKEQDFEVAWREESGAVHKAFSERVAVVRSLEDTVNKLINDWDRQQIPDLYRSSPIFKKSLENLGNAFKSFGMMKENEFDLKNAWTMLSRAEYQVRRAMITILADKAHVKLKNISEAGASAFKLDSISKGKIREFVSKQPKADSKWLNETYPTFDLEKKQIIILTTAKFIKSYTPFFEKRSKAFRYSPILKDALVVLDEFDSTKKQILESAIDEALKIQADLNSLFVDLSKGLNKVNEGQLPAKLGKSFTFRDAFKEILNDAEQLTAEFKLDFLYKMEEQGRDSGFVMRVPQTNWVSVGKPWNAYFDEELRQVVLGRQPRNDLNFQRMLPRISVFLKGATKFILNRAREYQVSENQKLSSLDDAMTIEDACFSIYAALGLSKSQAKILFSLGHDFSSPTKVKTTYHAHSGRRFQQRGLSLFQFTNDPQHDLQTKINACFFNETPERYLLNLLSKANVLGLSATATLPTVLDNYDLGYLREMLGPRLLDGVHYLSDTTIKEFDFESRYAKQKIEVKVETGIVDRFFSEILPKNNQKIDNKKIWELDAELAKLVNCIPASEQSRIDKKYFARRYLNLFNSFVIFLTDPSMTSFLGLQSLLPGADGRMDENYIKETFTTLKDLVGGQDGVNTELRIVSSRNQEGIQEQLSEALNLVSQGGKRVYILSAYQTIGIGQNLQHEMNEFEREQAANIAPKGVSKSDRRQHTIDLAGMYLGEVTHILSSNLPFRMDAAGLRSIIEQEYLFDANEINIKYLNKYLKGLQHQRLERHPEYARSLYVSYSRTIIQALGRMNRSFNKMPLIRLVMPVNVLQMVTDSGIDVEKTSQEYRCLLTAAKDWERDFEKPSAEIAKQNATFNTFRDYRFVLAYLQTSKSWAQIYHDTRWFYVRHPTVSDKDLKSSQVFQQRDDEFGLQYLLNEHLDVSYEVKPINHDNGQFDFSGTGMEVSAEAAGLVAMCRYPGLKEAFESLDIPTKWEPNERILNPAQFYNYRGLLGEVSGQFIFQNEWSLKLADFGKPENYELFDFHWEGKVVIDFKNWRDAPDVDTKAERQKVEAKLAKLQANTQREWRVIIINILASNQTRPVMTVDGKILEISGLIDHQGKFLLTPEQKLNVWRFLNGTAVNDSNDTIRLQN

MQVSDFSGMIKKLQSQSPEHALMLLNAPTGTGKSYTIIRALCRYAIKHENFRAFFVTDQKKNLKEQDFEVAWREESGAVHKAFSERVAVVRSLEDTVNKLINDWDRQQIPDLYRSSPIFKKSLENLGNAFKSFGMMKENEFDLKNAWTMLSRAEYQVRRAMITILADKAHVKLKNISEAGASAFKLDSISKGKIREFVSKQPKADSKWLNETYPTFDLEKKQIIILTTAKFIKSYTPFFEKRSKAFRYSPILKDALVVLDEFDSTKKQILESAIDEALKIQADLNSLFVDLSKGLNKVNEGQLPAKLGKSFTFRDAFKEILNDAEQLTAEFKLDFLYKMEEQGRDSGFVMRVPQTNWVSVGKPWNAYFDEELRQVVLGRQPRNDLNFQRMLPRISVFLKGATKFILNRAREYQVSENQKLSSLDDAMTIEDACFSIYAALGLSKSQAKILFSLGHDFSSPTKVKTTYHAHSGRRFQQRGLSLFQFTNDPQHDLQTKINACFFNETPERYLLNLLSKANVLGLSATATLPTVLDNYDLGYLREMLGPRLLDGVHYLSDTTIKEFDFESRYAKQKIEVKVETGIVDRFFSEILPKNNQKIDNKKIWELDAELAKLVNCIPASEQSRIDKKYFARRYLNLFNSFVIFLTDPSMTSFLGLQSLLPGADGRMDENYIKETFTTLKDLVGGQDGVNTELRIVSSRNQEGIQEQLSEALNLVSQGGKRVYILSAYQTIGIGQNLQHEMNEFEREQAANIAPKGVSKSDRRQHTIDLAGMYLGEVTHILSSNLPFRMDAAGLRSIIEQEYLFDANEINIKYLNKYLKGLQHQRLERHPEYARSLYVSYSRTIIQALGRMNRSFNKMPLIRLVMPVNVLQMVTDSGIDVEKTSQEYRCLLTAAKDWERDFEKPSAEIAKQNATFNTFRDYRFVLAYLQTSKSWAQIYHDTRWFYVRHPTVSDKDLKSSQVFQQRDDEFGLQYLLNEHLDVSYEVKPINHDNGQFDFSGTGMEVSAEAAGLVAMCRYPGLKEAFESLDIPTKWEPNERILNPAQFYNYRGLLGEVSGQFIFQNEWSLKLADFGKPENYELFDFHWEGKVVIDFKNWRDAPDVDTKAERQKVEAKLAKLQANTQREWRVIIINILASNQTRPVMTVDGKILEISGLIDHQGKFLLTPEQKLNVWRFLNGTAVNDSNDTIRLQN
Protein #2 715 residues (100% resolved)

MEQQSMIRTTRLDYKINMMQLQADFKFLVVKIIDRSAFKDYNKLLASWSPEAVTSIRGRYKKGDYLMMFRQLPAIPTIAGLELHEILLEDMGEFKIYPNHLLQLLLNQQSANEKSLLEPCKTPELLISGEEWYREFRDMRQQYYALKLKVNWQQDLEMSVQTFTQVTEFQWDKQIYQFDEKRGRFQLCYQPSPGIYFVQGNHSANRNYIDFLSLQNKSSFYKSKVGVVQLVLDNLNLNAEKYLLRPVTFHKSLVEHSSRLKLSKRETIWQQLAGSSLNIYAQVNDRLSQELADQLADHLIRSQLVRKNSVHVVRSQKIQSGFNIQVIRDVRGRAAEDGYEVAKNDQIVQHLTVENFGHYQEGDKEITWKPKVSGKHHDPARDVAIVKLIQELCIKRDLANGKLKTVEPKLASLTQPLEFYYFAFLKKSFDPEVMVIKLAFTPEMELRFSKKKVRLNALTSDDEYTQVCKRVFDSLAAPKFYSAWDSVDCVVRSGNKQLLIQRLNRTIMPDGKQIRKQLELNRPDKTLWRDKVVEELGELRPMVSGDSDYVAAYEQLQALVTGMRPSFPLKDLDEAARKAGLNPKRRDMRQVNQFLTENATFTLKTTLQRELPDSPLAGMKWIGLTRIEEGEGHFNTFYFVGSDKSLKPVVNRAVTLRRLLPLAGDAGIIDELFPKLAAMMSVEFVRSGQYTVVPYPVKYLREYWYSILRQHPEYR

MEQQSMIRTTRLDYKINMMQLQADFKFLVVKIIDRSAFKDYNKLLASWSPEAVTSIRGRYKKGDYLMMFRQLPAIPTIAGLELHEILLEDMGEFKIYPNHLLQLLLNQQSANEKSLLEPCKTPELLISGEEWYREFRDMRQQYYALKLKVNWQQDLEMSVQTFTQVTEFQWDKQIYQFDEKRGRFQLCYQPSPGIYFVQGNHSANRNYIDFLSLQNKSSFYKSKVGVVQLVLDNLNLNAEKYLLRPVTFHKSLVEHSSRLKLSKRETIWQQLAGSSLNIYAQVNDRLSQELADQLADHLIRSQLVRKNSVHVVRSQKIQSGFNIQVIRDVRGRAAEDGYEVAKNDQIVQHLTVENFGHYQEGDKEITWKPKVSGKHHDPARDVAIVKLIQELCIKRDLANGKLKTVEPKLASLTQPLEFYYFAFLKKSFDPEVMVIKLAFTPEMELRFSKKKVRLNALTSDDEYTQVCKRVFDSLAAPKFYSAWDSVDCVVRSGNKQLLIQRLNRTIMPDGKQIRKQLELNRPDKTLWRDKVVEELGELRPMVSGDSDYVAAYEQLQALVTGMRPSFPLKDLDEAARKAGLNPKRRDMRQVNQFLTENATFTLKTTLQRELPDSPLAGMKWIGLTRIEEGEGHFNTFYFVGSDKSLKPVVNRAVTLRRLLPLAGDAGIIDELFPKLAAMMSVEFVRSGQYTVVPYPVKYLREYWYSILRQHPEYR
DNA #3 30 bases

(DC)(DA)(DC)(DT)(DA)(DA)(DT)(DA)(DG)(DA)(DT)(DT)(DA)(DG)(DA)(DG)(DC)(DC)(DG)(DT)(DC)(DA)(DC)(DG)(DT)(DA)(DT)(DC)(DA)(DA)

CACTAATAGATTAGAGCCGTCACGTATCAA
DNA #4 15 bases

(DT)(DG)(DA)(DC)(DG)(DG)(DC)(DT)(DC)(DT)(DA)(DA)(DT)(DC)(DT)

TGACGGCTCTAATCT
DNA #5 30 bases

(DT)(DT)(DG)(DA)(DT)(DA)(DC)(DG)(DA)(DC)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DA)(DT)(DT)(DA)(DG)(DA)(DT)(DA)(DA)(DA)(DG)(DT)(DG)

TTGATACGACTGCCGAGATTAGATAAAGTG
Non polymer #6 MG

InChI=1S/Mg/q+2

[Mg+2]
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Reference