2024-12-14_00000482|hard|9J2F

Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida; Electron microscopy 2.20Å
Protein #1 354 residues (94% resolved)

MKHMIAKSVATVALASLVSGCFEPPPAISTQTGFRGLSMGEVLHPATVAAKKERDAQYPPALPAVKAEGQPVSKVYKNVKVLGDLTEPEFLRTMTAMTEWVSPKEGCTYCHDEADLSSEAKYPFKVARRMLEMTRHINTDWTSHVAQTGVTCYTCHRGRPVPPYIRYLEPRLPLDNAIKPTFVEADNSGHVVRLAKNTAYSALNYDPFAMFLANDKREIRFVPQTALPPVGVSRGMERRPLSDAYATFALMMFISDAIGTNCTFCHNPQTFESWGNKSTPQRAIAWQGIKMTRDLNMNFLSPLKPVYPANRLGAQGEAPMADCRTCHQGVTKPLFGASRMKDYPELGPVKAAAK

MKHMIAKSVATVALASLVSGCFEPPPAISTQTGFRGLSMGEVLHPATVAAKKERDAQYPPALPAVKAEGQPVSKVYKNVKVLGDLTEPEFLRTMTAMTEWVSPKEGCTYCHDEADLSSEAKYPFKVARRMLEMTRHINTDWTSHVAQTGVTCYTCHRGRPVPPYIRYLEPRLPLDNAIKPTFVEADNSGHVVRLAKNTAYSALNYDPFAMFLANDKREIRFVPQTALPPVGVSRGMERRPLSDAYATFALMMFISDAIGTNCTFCHNPQTFESWGNKSTPQRAIAWQGIKMTRDLNMNFLSPLKPVYPANRLGAQGEAPMADCRTCHQGVTKPLFGASRMKDYPELGPVKAAAK
Protein #2 274 residues (100% resolved)

MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVSAIFFIFLGVSLIGYAASQGPSLDPFAISINPPDLKYGFAGAPLLEGGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGWGFAFPYGILSHLDWVNNFGFQYLNWHYNPGHMSSVSFLFANAMALGLHGGLILSVANPGDGDKVKTAEHENAYFRDVVGYSIGALAIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS

MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVSAIFFIFLGVSLIGYAASQGPSLDPFAISINPPDLKYGFAGAPLLEGGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGWGFAFPYGILSHLDWVNNFGFQYLNWHYNPGHMSSVSFLFANAMALGLHGGLILSVANPGDGDKVKTAEHENAYFRDVVGYSIGALAIHRLGLFLASNIFLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS
Protein #3 332 residues (100% resolved)

MADFQTIYTQIQARGPDHFGPSGQWGDIDRVGKPIFIKWLGRIGDAQIGPVYLGASGVGGIAFGLTAILIIGFNMLAQVSFDPLQFFRQFFWLGLYPPKAQYGMGIPPLNDGGWWLMAGLMMTLSLGCWWIRVYSRARALGLGTHIAWNFAMAIFFVLCIGFFHPVLVGSWSEAVPFGIFPHLDWLTAFSMRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITDRGTAVERAALFWRWTMGFNATIESIHRWGWFFSFMVMFSASVGILLTGTFVDNWYLWCVKHGAAPDYPAFLPATPDPRAGTFDPRTLTGVPQ

MADFQTIYTQIQARGPDHFGPSGQWGDIDRVGKPIFIKWLGRIGDAQIGPVYLGASGVGGIAFGLTAILIIGFNMLAQVSFDPLQFFRQFFWLGLYPPKAQYGMGIPPLNDGGWWLMAGLMMTLSLGCWWIRVYSRARALGLGTHIAWNFAMAIFFVLCIGFFHPVLVGSWSEAVPFGIFPHLDWLTAFSMRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITDRGTAVERAALFWRWTMGFNATIESIHRWGWFFSFMVMFSASVGILLTGTFVDNWYLWCVKHGAAPDYPAFLPATPDPRAGTFDPRTLTGVPQ
Protein #4 260 residues (100% resolved)

(FME)YYGALANHLDIAQLAWYGHWLVIWTVVLFYLRREDRREGYPLVEPLGLVKLPSPDVQSGELPYPKTFTLYHGGTVQAPNPNRRYETRELKLAQTDGFEGAPLAPTGNPMVDGVGPASWAERSEVVDSTFEGKAKIVPLRAAPEFYIAEGDLDPRGLPVFGADGIEAGTVTDLWVDRSEYYFRYLEISVAGSARTALMPLGFASITKDGVKVQAILASQFANVPRLQSRDQITLREEDKVSAYYAGGLLYATPERAEPLL

MYYGALANHLDIAQLAWYGHWLVIWTVVLFYLRREDRREGYPLVEPLGLVKLPSPDVQSGELPYPKTFTLYHGGTVQAPNPNRRYETRELKLAQTDGFEGAPLAPTGNPMVDGVGPASWAERSEVVDSTFEGKAKIVPLRAAPEFYIAEGDLDPRGLPVFGADGIEAGTVTDLWVDRSEYYFRYLEISVAGSARTALMPLGFASITKDGVKVQAILASQFANVPRLQSRDQITLREEDKVSAYYAGGLLYATPERAEPLL
Protein #5 69 residues (72% resolved)

MANENPRSASWKLWLILDPRRVLTALFIYLTVIALLIHFGLLSTNRLNWWEFQRGLPAASLVVVPPAVG

MANENPRSASWKLWLILDPRRVLTALFIYLTVIALLIHFGLLSTNRLNWWEFQRGLPAASLVVVPPAVG
Protein #6 69 residues (74% resolved)

MADLKPSLTGLTEEEAKEFHSVFVSSMVLYLATAVIVHYLVWTARPWIAPIPKGWVNLDGVTTALSYLV

MADLKPSLTGLTEEEAKEFHSVFVSSMVLYLATAVIVHYLVWTARPWIAPIPKGWVNLDGVTTALSYLV
Protein #7 56 residues (50% resolved)

MKLSFVIGALSAILASTAASAAMVNGVVQPSITDWNLWVPLGILGIPTIWIALLYR

MKLSFVIGALSAILASTAASAAMVNGVVQPSITDWNLWVPLGILGIPTIWIALLYR
Protein #8 57 residues (63% resolved)

MKLSAVIGALSVVLTSTLASAYFAADGSVVPSITDANLWVPLGILGIPTIWIALLYR

MKLSAVIGALSVVLTSTLASAYFAADGSVVPSITDANLWVPLGILGIPTIWIALLYR
Non polymer #9 BCB

InChI=1S/C55H73N4O6.Mg/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3;/h13,25,27-32,34-35,40,51H,14-24,26H2,1-12H3,(H-,56,57,58,59,60,62);/q-1;+4/p-1/b33-25+,39-13+;/t31-,32-,34-,35+,40+,51-;/m1./s1

C/C=C1/c2cc3c(c4c5n3[Mg]67[n+]2c(cc8n6c(cc9[n+]7c(c5[C@H](C4=O)C(=O)OC)[C@H]([C@@H]9C)CCC(=O)OC/C=C(C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)c(c8C(=O)C)C)C1C)C
Non polymer #10 BPB

InChI=1S/C55H74N4O6/c1-13-39-34(7)41-29-46-48(38(11)60)36(9)43(57-46)27-42-35(8)40(52(58-42)50-51(55(63)64-12)54(62)49-37(10)44(59-53(49)50)28-45(39)56-41)23-24-47(61)65-26-25-33(6)22-16-21-32(5)20-15-19-31(4)18-14-17-30(2)3/h13,25,27-32,34-35,40,51,57,59H,14-24,26H2,1-12H3/b33-25+,39-13+,41-29-,42-27-,43-27-,44-28-,45-28-,46-29-,52-50-/t31-,32-,34-,35+,40+,51-/m1/s1

C/C=C1/c2/cc3/c(c4c([nH]3)c(c5n/c(cc6c(c(c([nH]6)/cc(
Non polymer #11 CDL

InChI=1S/C81H158O17P2/c1-5-9-13-17-21-25-29-33-37-41-45-49-53-57-61-65-78(83)91-71-76(97-80(85)67-63-59-55-51-47-43-39-35-31-27-23-19-15-11-7-3)73-95-99(87,88)93-69-75(82)70-94-100(89,90)96-74-77(98-81(86)68-64-60-56-52-48-44-40-36-32-28-24-20-16-12-8-4)72-92-79(84)66-62-58-54-50-46-42-38-34-30-26-22-18-14-10-6-2/h75-77,82H,5-74H2,1-4H3,(H,87,88)(H,89,90)/p-2/t76-,77-/m1/s1

CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)([O-])OCC(COP(=O)([O-])OC[C@@H](COC(=O)CCCCCCCCCCCCCCCCC)OC(=O)CCCCCCCCCCCCCCCCC)O)OC(=O)CCCCCCCCCCCCCCCCC
Non polymer #12 DGA

InChI=1S/C39H76O5/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-38(41)43-36-37(35-40)44-39(42)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h37,40H,3-36H2,1-2H3/t37-/m0/s1

CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCCCCCCCCCCCCC
Non polymer #13 FE

InChI=1S/Fe/q+3

[Fe+3]
Non polymer #14 HEC

InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,9-12H2,1-6H3,(H,39,40)(H,41,42);/q-4;+4/b21-7?,22-8?,26-13-,29-14-,30-15-,31-16-;

CC=C1C(=C2C=C3C(=CC)C(=C4N3[Fe]56N2C1=Cc7n5c(c(c7C)CCC(=O)O)C=C8N6C(=C4)C(=C8CCC(=O)O)C)C)C
Non polymer #15 LMT

InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(31)19(29)22(16(14-26)34-23)35-24-20(30)18(28)17(27)15(13-25)33-24/h15-31H,2-14H2,1H3/t15-,16-,17-,18+,19-,20-,21-,22-,23-,24-/m1/s1

CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
Non polymer #16 MG

InChI=1S/Mg/q+2

[Mg+2]
Non polymer #17 MQ7

InChI=1S/C46H64O2/c1-34(2)18-12-19-35(3)20-13-21-36(4)22-14-23-37(5)24-15-25-38(6)26-16-27-39(7)28-17-29-40(8)32-33-42-41(9)45(47)43-30-10-11-31-44(43)46(42)48/h10-11,18,20,22,24,26,28,30-32H,12-17,19,21,23,25,27,29,33H2,1-9H3/b35-20+,36-22+,37-24+,38-26+,39-28+,40-32+

CC1=C(C(=O)c2ccccc2C1=O)CC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(C)C
Non polymer #18 NS0

InChI=1S/C40H60/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-17,19,21-22,25-31,34H,13-14,18,20,23-24,32H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+

CC(C)CCC/C(=C/CC/C(=C/C=C/C(=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(C)/CCC=C(C)C)/C)/C)/C
Non polymer #19 NS5

InChI=1S/C40H60/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-17,19,21-22,25-31,34H,13-14,18,20,23-24,32H2,1-10H3/b12-11-,25-15+,26-16+,31-17+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+

CC(C)CCC/C(=C/CC/C(=C/C=C/C(=C/C=CC=C(/C)C=CC=C(/C)C=CC=C(/C)CCC=C(C)C)/C)/C)/C
Non polymer #20 PGV

InChI=1S/C40H77O10P/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(44)50-38(36-49-51(45,46)48-34-37(42)33-41)35-47-39(43)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h13,15,37-38,41-42H,3-12,14,16-36H2,1-2H3,(H,45,46)/b15-13-/t37-,38+/m0/s1

CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@](=O)(O)OC[C@H](CO)O)OC(=O)CCCCCCCCCC=C/CCCCCC
Non polymer #21 UQ8

InChI=1S/C49H74O4/c1-36(2)20-13-21-37(3)22-14-23-38(4)24-15-25-39(5)26-16-27-40(6)28-17-29-41(7)30-18-31-42(8)32-19-33-43(9)34-35-45-44(10)46(50)48(52-11)49(53-12)47(45)51/h20,22,24,26,28,30,32,34H,13-19,21,23,25,27,29,31,33,35H2,1-12H3/b37-22+,38-24+,39-26+,40-28+,41-30+,42-32+,43-34+

CC1=C(C(=O)C(=C(C1=O)OC)OC)CC=C(C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(/C)CCC=C(C)C
Download coordinates
Reference