2024-12-07_00000412|ligand|9FZ2

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe; X-ray diffraction 1.40Å
Protein #1 542 residues (94% resolved)

SDSSSSKSDSSDGNTAKVADPIEGVKATASTDKYRNYYEIFVNSFCDSNGDETGDLQGIISQLDYLNDGDPNSGDDLGVDAIWLTPIMPSKSYHKYDVEDYYNIDPDFGTLDDFDKLIEECHKRGINVILDLVLNHASSKNPLFTKAVEEVADNKLDGNAEYFEIHKASYFDSNTQTISLGNGYACEANFSQEMPEWNLNSKKTREEFTKIAKFWLDRGVDGFRLDACKYFTNKETDGTEFLKWFYDTCKGIKEDVYMVGENWTDDSDIQELYKSGIDSQFAFKFSTSTGTIISNIISQGGMATAKKIMNYDNKMAESNPNAINAMFLSNHDQVRSGNALESQGLSSQKLAAAVYMLAPGNPFIYYGEEIGIKAPNTTNDAAYRTQMVFDSENLPDIYVNGIGDEPDVPTGGGVKQQLADKDSLLNYYRRIITIKNQNPEIARGRIVGTQGFDDKTVGAYYVEYEDSKLLIIHNFSKNDAKELTITDDMIKNATLRADLIPESSSKHTELKDGKISVPPQSTVIIKSAEGQFYLNEHHHHHH

SDSSSSKSDSSDGNTAKVADPIEGVKATASTDKYRNYYEIFVNSFCDSNGDETGDLQGIISQLDYLNDGDPNSGDDLGVDAIWLTPIMPSKSYHKYDVEDYYNIDPDFGTLDDFDKLIEECHKRGINVILDLVLNHASSKNPLFTKAVEEVADNKLDGNAEYFEIHKASYFDSNTQTISLGNGYACEANFSQEMPEWNLNSKKTREEFTKIAKFWLDRGVDGFRLDACKYFTNKETDGTEFLKWFYDTCKGIKEDVYMVGENWTDDSDIQELYKSGIDSQFAFKFSTSTGTIISNIISQGGMATAKKIMNYDNKMAESNPNAINAMFLSNHDQVRSGNALESQGLSSQKLAAAVYMLAPGNPFIYYGEEIGIKAPNTTNDAAYRTQMVFDSENLPDIYVNGIGDEPDVPTGGGVKQQLADKDSLLNYYRRIITIKNQNPEIARGRIVGTQGFDDKTVGAYYVEYEDSKLLIIHNFSKNDAKELTITDDMIKNATLRADLIPESSSKHTELKDGKISVPPQSTVIIKSAEGQFYLNEHHHHHH
Non polymer #2 A1IHI

InChI=1S/C8H19NO/c9-7-5-3-1-2-4-6-8-10/h10H,1-9H2

C(CCCCO)CCCN
Non polymer #3 CA

InChI=1S/Ca/q+2

[Ca+2]
Non polymer #4 PBW

InChI=1S/C7H14O6/c8-1-2-3(9)5(11)7(13)6(12)4(2)10/h2-13H,1H2/t2-,3-,4+,5+,6-,7-

C(C1[C@H]([C@@H](C(C([C@H]1O)O)O)O)O)O
Download coordinates
Reference