2024-11-16_00000092
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medium
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8X3Z
ThDP-dependent HKA synthase;
X-ray diffraction 2.75Å
Protein #1
552 residues (93% resolved)
Raw Sequence ...
MKAARIVLDVLKQNGVQHMFGIPAGSVNAFFDELTQMDDITPVVTKHEGAAGYMAAAYAKYTNHLAVCIACSGPGGTNLVTGAANAMREHLPVVFLTGAVPVSTLGLNASQELDAEPIFRPVTKYSATVNDVANVVEEITKAVEIALSGVPGPVHIALPIDVQHQQVPDATLPAAAERNLITPDADVLDRVAEELIARESGYILAGQGIRNAVPALLELAEVLNWPVVTTPQAKGYLPASHPLVVGVYGFAGHEAASELVSGDAHNVALIIGSSLGETATNNYNAAITQDRFTVQLDFDASVFNRKYAVDEAVLGDITLSVPALVEAVKARKGATSPAPLKVKKQAPSEGGSEYTTKNVLLALQQSLPASTRYTIDIGEFMSYMINHLEVKESYTYEINVHFGAMGSGIGSAIGSKLAEPERPVVCITGDGCFFMHGMELLTAKEYNLPILFVVMNNARLGMVYHGHNLQFKRTHSAFEQEPVNISAMAAAMGIPSHRVSEMEDLTEERVQELLSHNGPAVLEVFLKDNSTPPMGDRVKFLSSFGKHHHHHH
Canonical Sequence ...
MKAARIVLDVLKQNGVQHMFGIPAGSVNAFFDELTQMDDITPVVTKHEGAAGYMAAAYAKYTNHLAVCIACSGPGGTNLVTGAANAMREHLPVVFLTGAVPVSTLGLNASQELDAEPIFRPVTKYSATVNDVANVVEEITKAVEIALSGVPGPVHIALPIDVQHQQVPDATLPAAAERNLITPDADVLDRVAEELIARESGYILAGQGIRNAVPALLELAEVLNWPVVTTPQAKGYLPASHPLVVGVYGFAGHEAASELVSGDAHNVALIIGSSLGETATNNYNAAITQDRFTVQLDFDASVFNRKYAVDEAVLGDITLSVPALVEAVKARKGATSPAPLKVKKQAPSEGGSEYTTKNVLLALQQSLPASTRYTIDIGEFMSYMINHLEVKESYTYEINVHFGAMGSGIGSAIGSKLAEPERPVVCITGDGCFFMHGMELLTAKEYNLPILFVVMNNARLGMVYHGHNLQFKRTHSAFEQEPVNISAMAAAMGIPSHRVSEMEDLTEERVQELLSHNGPAVLEVFLKDNSTPPMGDRVKFLSSFGKHHHHHH
Non polymer #2
ADP
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
SMILES: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
Non polymer #3
MG
InChI=1S/Mg/q+2
InChI=1S/Mg/q+2
SMILES: [Mg+2]
[Mg+2]
Non polymer #4
TPP
InChI=1S/C12H18N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1
InChI=1S/C12H18N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1
SMILES: Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCO[P@](=O)(O)OP(=O)(O)O
Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCO[P@](=O)(O)OP(=O)(O)O
Biounit #1
homo-dimer
Download coordinates
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Model
Reference
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