2024-11-09_00000135|hard|9BIO

Structure of VRC44.01 Fab in complex with 3BNC117-purified C1080.c3 RnS SOSIP.664 HIV-1 Env trimer; Electron microscopy 2.83Å
Protein #1 170 residues (80% resolved)

AVGIGAMIFGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLPRAPEAQQHLLQLTVWGIKQLQARVLAVERYLEVQKFLGLWGCSGKIICCTAVPWNSTWSNKSFEQIWNNMTWIEWEREISNYTSQIYDILTESQFQQDINEVDLLELDGSAPTKAKRRVVQREKR

AVGIGAMIFGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLPRAPEAQQHLLQLTVWGIKQLQARVLAVERYLEVQKFLGLWGCSGKIICCTAVPWNSTWSNKSFEQIWNNMTWIEWEREISNYTSQIYDILTESQFQQDINEVDLLELDGSAPTKAKRRVVQREKR
Protein #2 478 residues (99% resolved)

AENLWVTVYYGVPVWKDADTTLFCASDAKAHETEAHNIWATHACVPTDPNPQEIYMENVTENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLSCTNVTLTNVNYTNNFPNIGNITDEVRNCSFNVTTEIRDKKQKVYALFYKLDIVQMENKNSYRLINCNTSVCKQACPKISFDPIPIHYCTPAGYAILKCNEKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNNTRTSVTIGPGQVFYRTGDIIGDIRKAYCEINGTKWNETLKQVVGKLKEHFPNKTISFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNSTWINSTTIKEYNDTIIYLPCKIKQIINMWQGVGQCMYAPPIRGKINCVSNITGILLTRDGGDANATNDTETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKCKRRVVERRRRRR

AENLWVTVYYGVPVWKDADTTLFCASDAKAHETEAHNIWATHACVPTDPNPQEIYMENVTENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLSCTNVTLTNVNYTNNFPNIGNITDEVRNCSFNVTTEIRDKKQKVYALFYKLDIVQMENKNSYRLINCNTSVCKQACPKISFDPIPIHYCTPAGYAILKCNEKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNNTRTSVTIGPGQVFYRTGDIIGDIRKAYCEINGTKWNETLKQVVGKLKEHFPNKTISFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNSTWINSTTIKEYNDTIIYLPCKIKQIINMWQGVGQCMYAPPIRGKINCVSNITGILLTRDGGDANATNDTETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKCKRRVVERRRRRR
Protein #3 226 residues (54% resolved)

QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC

QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Protein #4 206 residues (48% resolved)

DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Protein #5 107 residues (99% resolved)

AIYLTQSPSSLSASVGERVTITCRASQDIGDTLAWYQQQPGRPPFLVVYRASTLNYGVPSRFSGGGSGTRFTLTISSLQPADSGTYFCQQFKTFPFTFGPGTKVEVK

AIYLTQSPSSLSASVGERVTITCRASQDIGDTLAWYQQQPGRPPFLVVYRASTLNYGVPSRFSGGGSGTRFTLTISSLQPADSGTYFCQQFKTFPFTFGPGTKVEVK
Protein #6 124 residues (96% resolved)

QSYLVQSGPEVKKPGTAVKVSCQASRYPFTFFGISWVRQAPGKGPQWMGWISPYNGHAIYLDELKDRLTLTTDTDTTTAYMELRNLRSADTAVYFCARDHTRQDSRGYDFWGQGTLVTVSSAST

QSYLVQSGPEVKKPGTAVKVSCQASRYPFTFFGISWVRQAPGKGPQWMGWISPYNGHAIYLDELKDRLTLTTDTDTTTAYMELRNLRSADTAVYFCARDHTRQDSRGYDFWGQGTLVTVSSAST
Non polymer #7 NAG

InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1

CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O
Non polymer #8 PO4

InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3

[O-]P(=O)([O-])[O-]
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Reference