2024-09-28_00000054|hard|8RJA

Crystal structure of the F420-reducing formylmethanofuran dehydrogenase complex from the ethanotroph Candidatus Ethanoperedens thermophilum; X-ray diffraction 1.97Å
Protein #1 567 residues (100% resolved)

MSELLIKNGKVFDPINGVKGDLMDIAIKDGKIVESVSSGAKVIDASGMTVMAGGVDAHSHIAGGKVNVGRIMRPDDGRSGLKPRTKITRPCSGYTVPNTFAMGYRYAELGYTTAFEAAIPILKARHTHEEFEDIPIIDKGGLTLFGSNWQVMDAVREGDLEKLAAYVAWGLRASRGYGV(KCX)IVNPGGGEAWGFGKNVRGLDDPVPGFDVTPSEIILALARANEMLNLPHSIHLHCNRLGTPGNYETTIETMRRLEKIKPSRDRQVVHVTHVTFNAWGGTHFGNFESKADAVAEYLNKSDHVTIDMGQLIFGNATTMTADGPVQYANARLLGAKWGNGDVELEDASGVVPLFYMRKMYVHDIMWAIGLELALLTNDPWQVLLTTDHPNGGPFVNYPEVIALLMSAKKREEEIAKLSDKMQERTCLSGIDREFDWYDIAIKTRAAHAKILGLHEYGKGHLGVGADGDVTIYNINTESVDPSVEHAAVKKAFQLPAYTIKGGEIVAKEGEITATPTGRTFWVDARVPEEYTTRMMKDLEWKFRKYYSVKMANYMVQDEYVQHPVVLEAGVN

MSELLIKNGKVFDPINGVKGDLMDIAIKDGKIVESVSSGAKVIDASGMTVMAGGVDAHSHIAGGKVNVGRIMRPDDGRSGLKPRTKITRPCSGYTVPNTFAMGYRYAELGYTTAFEAAIPILKARHTHEEFEDIPIIDKGGLTLFGSNWQVMDAVREGDLEKLAAYVAWGLRASRGYGVKIVNPGGGEAWGFGKNVRGLDDPVPGFDVTPSEIILALARANEMLNLPHSIHLHCNRLGTPGNYETTIETMRRLEKIKPSRDRQVVHVTHVTFNAWGGTHFGNFESKADAVAEYLNKSDHVTIDMGQLIFGNATTMTADGPVQYANARLLGAKWGNGDVELEDASGVVPLFYMRKMYVHDIMWAIGLELALLTNDPWQVLLTTDHPNGGPFVNYPEVIALLMSAKKREEEIAKLSDKMQERTCLSGIDREFDWYDIAIKTRAAHAKILGLHEYGKGHLGVGADGDVTIYNINTESVDPSVEHAAVKKAFQLPAYTIKGGEIVAKEGEITATPTGRTFWVDARVPEEYTTRMMKDLEWKFRKYYSVKMANYMVQDEYVQHPVVLEAGVN
Protein #2 430 residues (100% resolved)

MVEITDAICSFCGSLCDDLTVKVEDNRIVDVRRACRLGAKKILGHERIPAPMIRDGSGELVEASYDEAIDRAAEILAGSKRPLLYGWASTSCEAQSKGILLAEIIGGVIDNTASVCHGPSTLAVQEKGLPTASLGQMKNRADLVIFWGCNPVHAHPRHMSRYSVYKKGFFLDRGRQNRKFVTVDVRMTDTAAISDEFIQIEQGSDYLIVSAIRALVNGKGDVVPETVAGVPKEELARVAEMMTSCRFGMILYGMGLTQSRSKYKNIDIALSLINDLNTKTKFVITPMRGHYNVTGFGQVCSWQTGFPTVDLARGVPYYNPGEMSANDLLMRDEVDSAMIIAGDAGAHFPAASIRNLAKVPLVQIDPYPNATTELANVVIPAAIVGIECEGTAYRMDGVSLRMRKLVESDYLSDEEILDRIIEKVRVIKGE

MVEITDAICSFCGSLCDDLTVKVEDNRIVDVRRACRLGAKKILGHERIPAPMIRDGSGELVEASYDEAIDRAAEILAGSKRPLLYGWASTSCEAQSKGILLAEIIGGVIDNTASVCHGPSTLAVQEKGLPTASLGQMKNRADLVIFWGCNPVHAHPRHMSRYSVYKKGFFLDRGRQNRKFVTVDVRMTDTAAISDEFIQIEQGSDYLIVSAIRALVNGKGDVVPETVAGVPKEELARVAEMMTSCRFGMILYGMGLTQSRSKYKNIDIALSLINDLNTKTKFVITPMRGHYNVTGFGQVCSWQTGFPTVDLARGVPYYNPGEMSANDLLMRDEVDSAMIIAGDAGAHFPAASIRNLAKVPLVQIDPYPNATTELANVVIPAAIVGIECEGTAYRMDGVSLRMRKLVESDYLSDEEILDRIIEKVRVIKGE
Protein #3 253 residues (100% resolved)

MQTVTLTPRKSSKISVEAETITPDNFAGKTVEEIEKVTVWEGNNKTTLGEFFEVALDGSDTPENTKIVIEGSIPRVKRVGEGMSAGIILINGDVDMHVGAKMRGGRITVKGNADSWAGREMKGGELIIEGNAEYYLGAGYRGESCGMRGGRITVFGNARDYVGEHMCGGEIIIKGNAGLMPGISNNGGKIIIEGNTTMPGGEMKKGTIIINGRVDELVPVYQQEEDEELDGVSYKKYTGDVVAGGKGTLYIKA

MQTVTLTPRKSSKISVEAETITPDNFAGKTVEEIEKVTVWEGNNKTTLGEFFEVALDGSDTPENTKIVIEGSIPRVKRVGEGMSAGIILINGDVDMHVGAKMRGGRITVKGNADSWAGREMKGGELIIEGNAEYYLGAGYRGESCGMRGGRITVFGNARDYVGEHMCGGEIIIKGNAGLMPGISNNGGKIIIEGNTTMPGGEMKKGTIIINGRVDELVPVYQQEEDEELDGVSYKKYTGDVVAGGKGTLYIKA
Protein #4 126 residues (99% resolved)

MKRDVNIVTGRTIKQGADIENKLSREYFEACARCEVGPEDLRALGISEGSNVRISTDFGSVVVPVALCEGNPTGIVFIPMGPWANAVVNPDTHGCGMPGFKGVPGTIEPTDDTPLDLKSLMKLYKE

MKRDVNIVTGRTIKQGADIENKLSREYFEACARCEVGPEDLRALGISEGSNVRISTDFGSVVVPVALCEGNPTGIVFIPMGPWANAVVNPDTHGCGMPGFKGVPGTIEPTDDTPLDLKSLMKLYKE
Protein #5 359 residues (98% resolved)

MMNGYDQLVEEVIDAGICVSCGNCAAVCPLQYISMEEKKPVQDREKRDEIEKRSGLACNDCNLCAMSCPRIEPTYFWQKRELKRMEHEGEVKAARTTYKPIQDVCQDGGIVTTLFKYLLDSGRVDGVVVSQYNGDYNPVPVLAKREDDLLRAAGTRYTVSPAYSPLTDIKQLKDDGYERIAIVGTPCQIYALRKTQAIYNSQRLLIPHNIITFAIGLFCAEEFDDRILQDLEVDIADVTGFDVKKEGLIISLKSGEKKIIPHEDLEEYVREGCKICSDFNSPYADISVGSVGSPPGWSTVIVRTETGREIYQKLLEKGLIEETTVDEKGLKLIDKMAQKKINNAQTKIKERSNKESEEE

MMNGYDQLVEEVIDAGICVSCGNCAAVCPLQYISMEEKKPVQDREKRDEIEKRSGLACNDCNLCAMSCPRIEPTYFWQKRELKRMEHEGEVKAARTTYKPIQDVCQDGGIVTTLFKYLLDSGRVDGVVVSQYNGDYNPVPVLAKREDDLLRAAGTRYTVSPAYSPLTDIKQLKDDGYERIAIVGTPCQIYALRKTQAIYNSQRLLIPHNIITFAIGLFCAEEFDDRILQDLEVDIADVTGFDVKKEGLIISLKSGEKKIIPHEDLEEYVREGCKICSDFNSPYADISVGSVGSPPGWSTVIVRTETGREIYQKLLEKGLIEETTVDEKGLKLIDKMAQKKINNAQTKIKERSNKESEEE
Protein #6 85 residues (92% resolved)

MANQMSFKKVKVSEECVGCGVCETVCPVNNLLEDGAEFDPDRAKLAIKVTNGEAAVDEEVCLTCGTCTFNCPSGAVYAEYEPRAS

MANQMSFKKVKVSEECVGCGVCETVCPVNNLLEDGAEFDPDRAKLAIKVTNGEAAVDEEVCLTCGTCTFNCPSGAVYAEYEPRAS
Non polymer #7 ACT

InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1

CC(=O)[O-]
Non polymer #8 CL

InChI=1S/ClH/h1H/p-1

[Cl-]
Non polymer #9 EDO

InChI=1S/C2H6O2/c3-1-2-4/h3-4H,1-2H2

C(CO)O
Non polymer #10 FAD

InChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1

Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
Non polymer #11 H2S

InChI=1S/H2S/h1H2

S
Non polymer #12 MGD

InChI=1S/C20H26N10O13P2S2/c21-19-26-13-7(15(33)28-19)24-6-12(47)11(46)5(41-17(6)25-13)2-40-45(37,38)43-44(35,36)39-1-4-9(31)10(32)18(42-4)30-3-23-8-14(30)27-20(22)29-16(8)34/h3-6,9-10,17-18,24,31-32,46-47H,1-2H2,(H,35,36)(H,37,38)(H3,22,27,29,34)(H4,21,25,26,28,33)/t4-,5-,6+,9-,10-,17-,18-/m1/s1

c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4C(=C([C@H]5[C@@H](O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N
Non polymer #13 NA

InChI=1S/Na/q+1

[Na+]
Non polymer #14 PE4

InChI=1S/C16H34O8/c1-2-18-5-6-20-9-10-22-13-14-24-16-15-23-12-11-21-8-7-19-4-3-17/h17H,2-16H2,1H3

CCOCCOCCOCCOCCOCCOCCOCCO
Non polymer #15 PEG

InChI=1S/C4H10O3/c5-1-3-7-4-2-6/h5-6H,1-4H2

C(COCCO)O
Non polymer #16 PG4

InChI=1S/C8H18O5/c9-1-3-11-5-7-13-8-6-12-4-2-10/h9-10H,1-8H2

C(COCCOCCOCCO)O
Non polymer #17 SF4

InChI=1S/4Fe.4S

[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
Non polymer #18 W

InChI=1S/W/q+6

[W+6]
Non polymer #19 ZN

InChI=1S/Zn/q+2

[Zn+2]
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Reference