2024-06-22_00000188
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medium
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8RBM
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, ferricyanide oxidized;
Electron microscopy 3.24Å
Protein #1
190 residues (99% resolved)
Raw Sequence ...
MEYVLFLLGTVLVHNVVLVGFLGLCPFMGVSSKLDPSIGLAVATTLVMGLGGASSWLLEHYVLLPLGIGFIRILAYIVVIAGMVQLIEMIIRKASPSLYRSLGIYLPLITTNCAVLGVPLLSVREGHDLTMAVLFGLGSGLGFSLIMIIFAGLRERLALANVPAAFSGPPIAFVTAGLLALAFMGFGGLI
Canonical Sequence ...
MEYVLFLLGTVLVHNVVLVGFLGLCPFMGVSSKLDPSIGLAVATTLVMGLGGASSWLLEHYVLLPLGIGFIRILAYIVVIAGMVQLIEMIIRKASPSLYRSLGIYLPLITTNCAVLGVPLLSVREGHDLTMAVLFGLGSGLGFSLIMIIFAGLRERLALANVPAAFSGPPIAFVTAGLLALAFMGFGGLI
Protein #2
496 residues (90% resolved)
Raw Sequence ...
MYFNLSSIRGGVHPAAHKDLSAALPIGSLPLPPRLYLPLRQHAGAEALPMVAVGDKVLKGQLLAFPPTEVSAPVHAPTSGRIVAIGPVPAPHPSGLTTTGIVLESDGEDRWIDLDVSTDPFAEDPLVLADRVAKAGIVGLGGAIFPAAVKLKQGTRHEIKTVLVNGSECEPYLTCDDRIMRERAEAIVDGARLIQHILRAYSVVIAIEDNKPEALAAMRAAAEHFGAIEVMAVPALYPMGSAKQLIQAVTGREVPAGGRSTDVGVLVHNAGTVYAIQQALRFGRPLISRVVTVSGACVKTPQNLDVLIGTPVQALIDACGGLSGDPQQLLLGGPMMGAVLPSTEVPVIKGATGLLALARHELPNKDPAPCIRCASCVDACPMGLTPLDMALYARADDYDGASEYGLRDCILCGCCSYVCPSHIPLVHYFQYAKGQQDERRSAARKSDYIKRQTEVRAARLAEEEAAKAAAKAAKEAAKAAKAAKTKAAKPSNEVES
Canonical Sequence ...
MYFNLSSIRGGVHPAAHKDLSAALPIGSLPLPPRLYLPLRQHAGAEALPMVAVGDKVLKGQLLAFPPTEVSAPVHAPTSGRIVAIGPVPAPHPSGLTTTGIVLESDGEDRWIDLDVSTDPFAEDPLVLADRVAKAGIVGLGGAIFPAAVKLKQGTRHEIKTVLVNGSECEPYLTCDDRIMRERAEAIVDGARLIQHILRAYSVVIAIEDNKPEALAAMRAAAEHFGAIEVMAVPALYPMGSAKQLIQAVTGREVPAGGRSTDVGVLVHNAGTVYAIQQALRFGRPLISRVVTVSGACVKTPQNLDVLIGTPVQALIDACGGLSGDPQQLLLGGPMMGAVLPSTEVPVIKGATGLLALARHELPNKDPAPCIRCASCVDACPMGLTPLDMALYARADDYDGASEYGLRDCILCGCCSYVCPSHIPLVHYFQYAKGQQDERRSAARKSDYIKRQTEVRAARLAEEEAAKAAAKAAKEAAKAAKAAKTKAAKPSNEVES
Protein #3
366 residues (95% resolved)
Raw Sequence ...
MSTISVAAGPFAHDRSSVNRIMLDVCLALTPATLFGLVMFGWPAINLWLVTCVSALAIEAACLRLLGQPMRRLLDGSALLTGWLLAISLPPWAPWWIGVGGSLFAIGIGKQLYGGIGQNPFNPAMLARVALLIAFPLQMTTWALPHPLFSSSAPGFFDSLAITFAGAPLADGMTGATALGNLKTELTLNRTAQEILEGGFSTISALFGSTPGSLGETSELLLLVGGVWLVLRRIIHWEIPVAILASVFVMATLAYLINPERYAGGLYQLTSGGLILCAFFIATDPVTSPISRVGRLIFGVGCGVLIYVIRTWGSFPEAAAFAVLFMNALTPLIDRYWRPRAYGRNVRGKPLVAAKWTSQVKEVDKV
Canonical Sequence ...
MSTISVAAGPFAHDRSSVNRIMLDVCLALTPATLFGLVMFGWPAINLWLVTCVSALAIEAACLRLLGQPMRRLLDGSALLTGWLLAISLPPWAPWWIGVGGSLFAIGIGKQLYGGIGQNPFNPAMLARVALLIAFPLQMTTWALPHPLFSSSAPGFFDSLAITFAGAPLADGMTGATALGNLKTELTLNRTAQEILEGGFSTISALFGSTPGSLGETSELLLLVGGVWLVLRRIIHWEIPVAILASVFVMATLAYLINPERYAGGLYQLTSGGLILCAFFIATDPVTSPISRVGRLIFGVGCGVLIYVIRTWGSFPEAAAFAVLFMNALTPLIDRYWRPRAYGRNVRGKPLVAAKWTSQVKEVDKV
Protein #4
238 residues (89% resolved)
Raw Sequence ...
MSHCGAPSVPEPEKKVPWQYFTSALWQYNVALVQMLALCPTLAVTTTATNGLGMGLATTLVLVMTNALISSMRHTISPEVRNPVMIGVIAGVVTLTDMAMNAWMHELYKVLGLFIALIVTNCAVLGRAESFCLRNPVIPSILDGAGMGAGFTAVLVVIGGIREILGSGTLFSQASSLLGSHFKWMEITVIPDFQGILLAILPPGAFIVLGFLLAAKRVIDRKRAERRQQTHGELVVLQ
Canonical Sequence ...
MSHCGAPSVPEPEKKVPWQYFTSALWQYNVALVQMLALCPTLAVTTTATNGLGMGLATTLVLVMTNALISSMRHTISPEVRNPVMIGVIAGVVTLTDMAMNAWMHELYKVLGLFIALIVTNCAVLGRAESFCLRNPVIPSILDGAGMGAGFTAVLVVIGGIREILGSGTLFSQASSLLGSHFKWMEITVIPDFQGILLAILPPGAFIVLGFLLAAKRVIDRKRAERRQQTHGELVVLQ
Protein #5
229 residues (85% resolved)
Raw Sequence ...
MNDTTMTPAEENAAPAEAAAGKPTLLARLEKWRPMVAYQGLSLGLVCAVVALLLLTGNIMTHGTIAEQQMQDRLATLREVLPQSLYDNNPLADSFKVQDAELGEVEVLPARLQGKLTAVVFQGRNIGYGGPIEQMMSVDAQGKILGVRVLTHKETPGLADKIEASRSDWIKVFDGLSLENTALDKWKVKKDGGQFDQFAGATITPRAVVKTVLQGLQFQARHAEQLKAE
Canonical Sequence ...
MNDTTMTPAEENAAPAEAAAGKPTLLARLEKWRPMVAYQGLSLGLVCAVVALLLLTGNIMTHGTIAEQQMQDRLATLREVLPQSLYDNNPLADSFKVQDAELGEVEVLPARLQGKLTAVVFQGRNIGYGGPIEQMMSVDAQGKILGVRVLTHKETPGLADKIEASRSDWIKVFDGLSLENTALDKWKVKKDGGQFDQFAGATITPRAVVKTVLQGLQFQARHAEQLKAE
Protein #6
174 residues (14% resolved)
Raw Sequence ...
MIEATLALTVMGVLLGCGLGLAARKFAVTDENPLIKEVSDLMPGSQCGQCGFPGCGAAAVAIVEGNASVTCCPPGGVGLAEKLAAILGVPLDASQVAAPMLARVEASQCIGCTRCYRACPTDAIVGASGQVHVVLEDACTGCGKCRDACPEDCVLLIPQEQTLDTWRWDKPAAA
Canonical Sequence ...
MIEATLALTVMGVLLGCGLGLAARKFAVTDENPLIKEVSDLMPGSQCGQCGFPGCGAAAVAIVEGNASVTCCPPGGVGLAEKLAAILGVPLDASQVAAPMLARVEASQCIGCTRCYRACPTDAIVGASGQVHVVLEDACTGCGKCRDACPEDCVLLIPQEQTLDTWRWDKPAAA
Non polymer #7
FES
InChI=1S/2Fe.2S
InChI=1S/2Fe.2S
SMILES: S1[Fe]S[Fe]1
S1[Fe]S[Fe]1
Non polymer #8
FMN
InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1
InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1
SMILES: Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
Non polymer #9
LMT
InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(31)19(29)22(16(14-26)34-23)35-24-20(30)18(28)17(27)15(13-25)33-24/h15-31H,2-14H2,1H3/t15-,16-,17-,18+,19-,20-,21-,22-,23-,24-/m1/s1
InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(31)19(29)22(16(14-26)34-23)35-24-20(30)18(28)17(27)15(13-25)33-24/h15-31H,2-14H2,1H3/t15-,16-,17-,18+,19-,20-,21-,22-,23-,24-/m1/s1
SMILES: CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
Non polymer #10
PTY
InChI=1S/C40H80NO8P/c1-3-5-7-9-11-13-15-17-18-19-20-21-23-25-27-29-31-33-40(43)49-38(37-48-50(44,45)47-35-34-41)36-46-39(42)32-30-28-26-24-22-16-14-12-10-8-6-4-2/h38H,3-37,41H2,1-2H3,(H,44,45)/t38-/m1/s1
InChI=1S/C40H80NO8P/c1-3-5-7-9-11-13-15-17-18-19-20-21-23-25-27-29-31-33-40(43)49-38(37-48-50(44,45)47-35-34-41)36-46-39(42)32-30-28-26-24-22-16-14-12-10-8-6-4-2/h38H,3-37,41H2,1-2H3,(H,44,45)/t38-/m1/s1
SMILES: CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCC)CO[P@@](=O)(O)OCCN
CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCC)CO[P@@](=O)(O)OCCN
Non polymer #11
RBF
InChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1
InChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1
SMILES: Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
Non polymer #12
SF4
InChI=1S/4Fe.4S
InChI=1S/4Fe.4S
SMILES: [S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
Biounit #1
hetero-1-1-1-1-1-2-mer
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Model
Reference
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