2024-06-01_00000196|hard|8XAY

Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA; Electron microscopy 2.81Å
Protein #1 571 residues (99% resolved)

MSRNNDINAEVVSVSPNKLKISVDDLEEFKIAEEKLGVGSYLRVSDNQDVALLAIIDNFSIEVKESQKQKYMIEASPIGLVKNGKFYRGGDSLALPPKKVEPAKLDEIISIYSDSIDINDRFTFSSLSLNTKVSVPVNGNRFFNKHIAIVGSTGSGKSHTVAKILQKAVDEKQEGYKGLNNSHIIIFDIHSEYENAFPNSNVLNVDTLTLPYWLLNGDELEELFLDTEANDHNQRNVFRQAITLNKKIHFQGDPATKEIISFHSPYYFDINEVINYINNRNNERKNKDNEHIWSDEEGNFKFDNENAHRLFKENVTPDGSSAGALNGKLLNFVDRLQSKIFDKRLDFILGEGSKSVTFKETLETLISYGKDKSNITILDVSGVPFEVLSICVSLISRLIFEFGYHSKKIKRKSNENQDIPILIVYEEAHKYAPKSDLSKYRTSKEAIERIAKEGRKYGVTLLLASQRPSEISETIFSQCNTFISMRLTNPDDQNYVKRLLPDTVGDITNLLPSLKEGEALIMGDSISIPSIVKIEKCTIPPSSIDIKYLDEWRKEWVDSEFDKIIEQWSKS

MSRNNDINAEVVSVSPNKLKISVDDLEEFKIAEEKLGVGSYLRVSDNQDVALLAIIDNFSIEVKESQKQKYMIEASPIGLVKNGKFYRGGDSLALPPKKVEPAKLDEIISIYSDSIDINDRFTFSSLSLNTKVSVPVNGNRFFNKHIAIVGSTGSGKSHTVAKILQKAVDEKQEGYKGLNNSHIIIFDIHSEYENAFPNSNVLNVDTLTLPYWLLNGDELEELFLDTEANDHNQRNVFRQAITLNKKIHFQGDPATKEIISFHSPYYFDINEVINYINNRNNERKNKDNEHIWSDEEGNFKFDNENAHRLFKENVTPDGSSAGALNGKLLNFVDRLQSKIFDKRLDFILGEGSKSVTFKETLETLISYGKDKSNITILDVSGVPFEVLSICVSLISRLIFEFGYHSKKIKRKSNENQDIPILIVYEEAHKYAPKSDLSKYRTSKEAIERIAKEGRKYGVTLLLASQRPSEISETIFSQCNTFISMRLTNPDDQNYVKRLLPDTVGDITNLLPSLKEGEALIMGDSISIPSIVKIEKCTIPPSSIDIKYLDEWRKEWVDSEFDKIIEQWSKS
Protein #2 394 residues (62% resolved)

MDRSAVDTIRGYCYQVDKTIIEIFSLPQMDDSIDIECIEDVDVYNDGHLTAIQCKYYESTDYNHSVISKPIRLMLSHFKDNKEKGANYYLYGHYKSGQEKLTLPLKVDFFKSNFLTYTEKKIKHEYHIENGLTEEDLQAFLDRLVININAKSFDDQKKETIQIIKNHFQCEDYEAEHYLYSNAFRKTYDISCNKKDRRIKKSDFVESINKSKVLFNIWFYQYEGRKEYLRKLKESFIRRSVNTSPYARFFILEFQDKTDIKTVKDCIYKIQSNWSNLSKRTDRPYSPFLLFHGTSDANLYELKNQLFNEDLIFTDGYPFKGSVFTPKMLIEGFSNKEIHFQFINDIDDFNETLNSINIRKEVYQFYTENCLDIPSQLPQVNIQVKDFADIKEIV

MDRSAVDTIRGYCYQVDKTIIEIFSLPQMDDSIDIECIEDVDVYNDGHLTAIQCKYYESTDYNHSVISKPIRLMLSHFKDNKEKGANYYLYGHYKSGQEKLTLPLKVDFFKSNFLTYTEKKIKHEYHIENGLTEEDLQAFLDRLVININAKSFDDQKKETIQIIKNHFQCEDYEAEHYLYSNAFRKTYDISCNKKDRRIKKSDFVESINKSKVLFNIWFYQYEGRKEYLRKLKESFIRRSVNTSPYARFFILEFQDKTDIKTVKDCIYKIQSNWSNLSKRTDRPYSPFLLFHGTSDANLYELKNQLFNEDLIFTDGYPFKGSVFTPKMLIEGFSNKEIHFQFINDIDDFNETLNSINIRKEVYQFYTENCLDIPSQLPQVNIQVKDFADIKEIV
DNA #3 59 bases

(DG)(DC)(DT)(DT)(DT)(DA)(DT)(DC)(DA)(DG)(DA)(DA)(DG)(DC)(DC)(DA)(DG)(DA)(DC)(DA)(DT)(DT)(DA)(DA)(DC)(DG)(DC)(DT)(DT)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA)(DA)(DC)(DT)(DC)(DA)(DA)(DC)(DG)(DA)(DG)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC)(DG)(DG)(DA)(DT)

GCTTTATCAGAAGCCAGACATTAACGCTTCTGGAGAAACTCAACGAGCTGGACGCGGAT
DNA #4 59 bases

(DA)(DT)(DC)(DC)(DG)(DC)(DG)(DT)(DC)(DC)(DA)(DG)(DC)(DT)(DC)(DG)(DT)(DT)(DG)(DA)(DG)(DT)(DT)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DA)(DA)(DG)(DC)(DG)(DT)(DT)(DA)(DA)(DT)(DG)(DT)(DC)(DT)(DG)(DG)(DC)(DT)(DT)(DC)(DT)(DG)(DA)(DT)(DA)(DA)(DA)(DG)(DC)

ATCCGCGTCCAGCTCGTTGAGTTTCTCCAGAAGCGTTAATGTCTGGCTTCTGATAAAGC
Non polymer #5 ADP

InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1

c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
Non polymer #6 AGS

InChI=1S/C10H16N5O12P3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(25-10)1-24-28(18,19)26-29(20,21)27-30(22,23)31/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H2,11,12,13)(H2,22,23,31)/t4-,6-,7-,10-/m1/s1

c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N
Non polymer #7 MG

InChI=1S/Mg/q+2

[Mg+2]
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Reference