2024-04-20_00000139
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hard
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8K2H
Crystal structure of Group 2Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GalNAc-thiazoline;
X-ray diffraction 2.20Å
Protein #1
646 residues (87% resolved)
Raw Sequence ...
GPGMDNNVSQEMTVPVEGVAGGGTAYGFNDAEPLKQSTDPSEVPTADLVNVWCMPNTVNVGSQETPRALEPINLLAARNERESFQIAMRPKVSWAASSPSGIVQVQCSDLCSSAGDRLVVGQSLKLRRVVPVLGVPDALVPLDLPVSQLSLFPGETSVIWVSIDVPTGQPPGQYEGEIIISAMKTDGGGSSHLAKHEKDQLCVELNTCLDIMEPIEGKPMDEVVERIKCASSSLRRILFSPSFSEFISTNGSTDMMEEDVVSNLSLRIKLRLTVWEFIIPVTPSLPAVIGVSDTVIEDRFAVEHGSEDWYKKLDLHFKWLLQYRISPYFCKWGESMRVLTYTSPWPADHPKSDEYLSDSRLAAYAVPYRQVIAGDDSRESYLRKEVEILRSKPHWNKAYFYLWDEPLNMEHFDNVRKMASEIYAYAPDSRVLTTYYCGPGDAPLAPTPFESFVKVPNLLRPYTQIYCTSEWVLGNREDLVKDILDELQTENGEEWWTYICLGPSDPHPNWHLGMRGTQQRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEVKFRRGLPPGDGVLYYPGEVFSSSSEPVASLRLERLLSGLQDYEYLKLYESKYGREEAMGLLEKTGVYTGPERYTLEHRPIDVLRGEVYNTCRPS
Canonical Sequence ...
GPGMDNNVSQEMTVPVEGVAGGGTAYGFNDAEPLKQSTDPSEVPTADLVNVWCMPNTVNVGSQETPRALEPINLLAARNERESFQIAMRPKVSWAASSPSGIVQVQCSDLCSSAGDRLVVGQSLKLRRVVPVLGVPDALVPLDLPVSQLSLFPGETSVIWVSIDVPTGQPPGQYEGEIIISAMKTDGGGSSHLAKHEKDQLCVELNTCLDIMEPIEGKPMDEVVERIKCASSSLRRILFSPSFSEFISTNGSTDMMEEDVVSNLSLRIKLRLTVWEFIIPVTPSLPAVIGVSDTVIEDRFAVEHGSEDWYKKLDLHFKWLLQYRISPYFCKWGESMRVLTYTSPWPADHPKSDEYLSDSRLAAYAVPYRQVIAGDDSRESYLRKEVEILRSKPHWNKAYFYLWDEPLNMEHFDNVRKMASEIYAYAPDSRVLTTYYCGPGDAPLAPTPFESFVKVPNLLRPYTQIYCTSEWVLGNREDLVKDILDELQTENGEEWWTYICLGPSDPHPNWHLGMRGTQQRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEVKFRRGLPPGDGVLYYPGEVFSSSSEPVASLRLERLLSGLQDYEYLKLYESKYGREEAMGLLEKTGVYTGPERYTLEHRPIDVLRGEVYNTCRPS
Non polymer #2
CL
InChI=1S/ClH/h1H/p-1
InChI=1S/ClH/h1H/p-1
SMILES: [Cl-]
[Cl-]
Non polymer #3
GNL
InChI=1S/C8H13NO4S/c1-3-9-5-7(12)6(11)4(2-10)13-8(5)14-3/h4-8,10-12H,2H2,1H3/t4-,5-,6+,7-,8-/m1/s1
InChI=1S/C8H13NO4S/c1-3-9-5-7(12)6(11)4(2-10)13-8(5)14-3/h4-8,10-12H,2H2,1H3/t4-,5-,6+,7-,8-/m1/s1
SMILES: CC1=N[C@@H]2[C@H]([C@H]([C@H](O[C@@H]2S1)CO)O)O
CC1=N[C@@H]2[C@H]([C@H]([C@H](O[C@@H]2S1)CO)O)O
Non polymer #4
PEG
InChI=1S/C4H10O3/c5-1-3-7-4-2-6/h5-6H,1-4H2
InChI=1S/C4H10O3/c5-1-3-7-4-2-6/h5-6H,1-4H2
SMILES: C(COCCO)O
C(COCCO)O
Biounit #1
homo-dimer
Download coordinates
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Model
Reference
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